This protocol leverages the work of Bioconda and depends on conda. For complete setup of these, please see:

Really, you just need to make sure conda is executable and you’ve set up your channels (steps 1 and 2). Then:

conda install python>=3.6 click \
    pyyaml snakemake>=5.1.4 biopython
pip install hundo

To update to the newest version of Hundo, run

pip install --upgrade hundo

Alternatively, if you do not want any new executables in your environment you can install into a new conda environment, e.g. hundo_env:

conda create --name hundo_env python=3 click pyyaml snakemake biopython
conda activate hundo_env
pip install hundo

To leave the environment:

conda deactivate